Package bref

Interface Summary

Interface	Description
BrefWriter	Interface BrefWrites writes phased, non-missing genotypes to a binary reference format (bref) file.

Class Summary

Class	Description
AsIsBref3Writer	Class AsIsBref3Writer writes VCF data with phased, non-missing genotypes to a binary reference format v3 (bref) file.
Bref3	Class Bref3 converts files in VCF format into bref version 3 format.
Bref3It	Class Bref3It represents an iterator whose next() which returns records from a bref version 3 file.
Bref3Reader	Class Bref3Reader contains methods for reading a bref 3 (binary reference format) file.
BrefBlock	Class BrefBlock represents starting chromosome coordinates and file offset for the start of a binary reference format (bref) data block.
CompressBref3Writer	Class CompressBref3Writer writes phased, non-missing genotypes to a binary reference format v3 (bref) file.
SeqCoder3	Class SeqCoder3 compresses a sequence of allele-coded RefGTRec objects.
UnBref3	Class UnBref3 converts files in bref version 3 format into VCF format.